IQ-TREE multicore version 2.0.3 for Linux 64-bit built Apr 26 2020
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    cn47 (AVX2, FMA3, 125 GB RAM)
Command: /home/smg655/.conda/envs/iqtree/bin/iqtree -t All_species_m2_intron.nwk -s All_Species_m2_intron.nexus --scf 100 --prefix concord_intron -T 2
Seed:    972250 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Wed Apr  7 13:47:36 2021
Kernel:  AVX+FMA - 2 threads (2 CPU cores detected)

Reading alignment file All_Species_m2_intron.nexus ... Nexus format detected
Alignment has 26 sequences with 533334 columns, 173808 distinct patterns
526431 parsimony-informative, 0 singleton sites, 6903 constant sites
WARNING: Some sequence names are changed as follows:
ActMar  GG -> ActMar__GG
AldGig  TG -> AldGig__TG
ApaSpi  GA -> ApaSpi__GA
BatTri  NN -> BatTri__NN
CarIns  GA -> CarIns__GA
CheAbi  TG -> CheAbi__TG
CheMyd  GG -> CheMyd__GG
CheSer  GG -> CheSer__GG
ChrPic  GG -> ChrPic__GG
CuoAmb  GG -> CuoAmb__GG
CuoMcc  GG -> CuoMcc__GG
DerCor  GG -> DerCor__GG
DerMaw  GG -> DerMaw__GG
EmyOrb  GN -> EmyOrb__GN
EmySub  GA -> EmySub__GA
GopAga  GG -> GopAga__GG
MalTer  GG -> MalTer__GG
MauRee  GG -> MauRee__GG
MesTub  GA -> MesTub__GA
PelCas  GA -> PelCas__GA
PelSin  GA -> PelSin__GA
PlaMeg  NG -> PlaMeg__NG
PodExp  GA -> PodExp__GA
SteCar  GG -> SteCar__GG
TerCar  GG -> TerCar__GG
TraScr  GG -> TraScr__GG

            Gap/Ambiguity  Composition  p-value
   1  ActMar__GG    1.43%    failed      0.00%
   2  AldGig__TG    1.66%    failed      0.00%
   3  ApaSpi__GA    3.51%    failed      0.00%
   4  BatTri__NN   48.27%    failed      0.00%
   5  CarIns__GA   11.54%    failed      0.00%
   6  CheAbi__TG    6.25%    failed      0.01%
   7  CheMyd__GG    0.85%    failed      0.00%
   8  CheSer__GG    3.36%    failed      0.00%
   9  ChrPic__GG    0.37%    failed      0.00%
  10  CuoAmb__GG    2.26%    failed      0.00%
  11  CuoMcc__GG    0.83%    failed      0.00%
  12  DerCor__GG    1.49%    failed      0.00%
  13  DerMaw__GG    2.43%    failed      0.12%
  14  EmyOrb__GN   40.93%    failed      0.00%
  15  EmySub__GA    2.19%    failed      0.00%
  16  GopAga__GG    0.91%    failed      0.01%
  17  MalTer__GG    6.95%    failed      0.00%
  18  MauRee__GG    0.66%    failed      0.00%
  19  MesTub__GA    3.67%    failed      0.00%
  20  PelCas__GA    5.73%    failed      0.00%
  21  PelSin__GA    3.91%    failed      0.00%
  22  PlaMeg__NG    0.86%    failed      0.00%
  23  PodExp__GA   13.80%    failed      0.00%
  24  SteCar__GG    3.26%    passed     96.14%
  25  TerCar__GG    1.82%    failed      0.00%
  26  TraScr__GG    0.77%    failed      0.00%
****  TOTAL         6.53%  25 sequences failed composition chi2 test (p-value<5%; df=3)
Reading tree All_species_m2_intron.nwk ...
un-rooted tree with 26 taxa and 49 branches
Computing site concordance factor...
4.946 sec
Tree with concordance factors written to concord_intron.cf.tree
Annotated tree (best viewed in FigTree) written to concord_intron.cf.tree.nex
Tree with branch IDs written to concord_intron.cf.branch
Concordance factors per branch printed to concord_intron.cf.stat
Date and Time: Wed Apr  7 13:47:46 2021
